research
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06/29/2023
RowPress: Amplifying Read Disturbance in Modern DRAM Chips
Memory isolation is critical for system reliability, security, and safet...
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12/09/2022
TargetCall: Eliminating the Wasted Computation in Basecalling via Pre-Basecalling Filtering
Basecalling is an essential step in nanopore sequencing analysis where t...
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08/21/2022
Scrooge: A Fast and Memory-Frugal Genomic Sequence Aligner for CPUs, GPUs, and ASICs
Motivation: Pairwise sequence alignment is a very time-consuming step in...
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07/20/2022
ApHMM: Accelerating Profile Hidden Markov Models for Fast and Energy-Efficient Genome Analysis
Profile hidden Markov models (pHMMs) are widely used in many bioinformat...
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05/16/2022
Going From Molecules to Genomic Variations to Scientific Discovery: Intelligent Algorithms and Architectures for Intelligent Genome Analysis
We now need more than ever to make genome analysis more intelligent. We ...
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05/12/2022
SeGraM: A Universal Hardware Accelerator for Genomic Sequence-to-Graph and Sequence-to-Sequence Mapping
A critical step of genome sequence analysis is the mapping of sequenced ...
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03/28/2022
